I’m a Ph.D. candidate of the Innovation Program of Oil Crops Genomics & Disease Resistance Improvement, located at Oil Crops Research Institute of Chinese Academy of Agricultural Sciences，doing some genome evolution related research.

My research interest includes the evolution of pan-genome & structural variations in rapeseed (Brassica napus), as well as construction of genomics database. If you are seeking any form of academic cooperation, please feel free to email me at cuixb223@outlook.com.

News

• 2023.05: BnaOmics database has been added into Database Commons. And it can be publicly accessed at https://ngdc.cncb.ac.cn/databasecommons/database/id/8269.
• 2023.04: A paper named “BnaOmics: a comprehensive platform combining pan-genome and multi-omics data of Brassica napus” is accepted by Plant Communications.
• 2023.04: My academic homepage has been re-designed according to the template from RayeRen’s homepage template.

Publications

Plant Communications 2023

BnaOmics: a comprehensive platform combining pan-genome and multi-omics data of Brassica napus
Xiaobo Cui, Ming Hu, Shengli Yao, Yuanyuan Zhang, Minqiang Tang, Lijiang Liu, Xiaohui Cheng, Chaobo Tong, Shengyi Liu, Plant Communications, 2023
Project | User manual

• BnaOmics is a comprehensive central platform for genomics, transcriptomics, epigenomics, and variations in Brassica napus (B. napus). It integrates 26 B. napus reference genomes, re-sequencing data of 2,885 accessions, 8,736,523 high-quality SVs, 112,886 high-quality presence/absence variants (PAVs), thousands of transcriptomes, and hundreds of epigenomes.

• Frontiers in Plant Science 2023 Genome-wide characterization of ubiquitin-conjugating enzyme gene family explores its genetic effects on the oil content and yield of Brassica napus, Shengli Yao, Meili Xie, Ming Hu, XiaoBo Cui, Haoming Wu, Xiaohua Li, Peng Hu, Chaobo Tong, Xiaoli Yu
• Industrial Crops and Products 2023 Genetic mapping and regional association analysis revealed a CYTOKININ RESPONSE FACTOR 10 gene controlling flowering time in Brassica napus L. , Li Yang, Meili Xie, Yupo Wu, Xiaobo Cui, Minqiang Tang, Lingli Yang, Yang Xiang, Yan Li, Zetao Bai, Junyan Huang, Xiaohui Cheng, Chaobo Tong, Lijiang Liu, Shengyi Liu, Chuanji Zhao
• Frontiers in Plant Science 2023 Genome-wide characterization of ovate family protein gene family associated with number of seeds per silique in Brassica napus, Jie Liu, Yupo Wu, Xiaobo Cui, Xiong Zhang, Meili Xie, Lijiang Liu, Yueying Liu, Junyan Huang, Xiaohui Cheng, Shengyi Liu
• Frontiers in Plant Science 2022 Integrating GWAS, linkage mapping and gene expression analyses reveal the genetic control of first branch height in Brassica napus L., Zhixue Dong, Minqiang Tang, Xiaobo Cui, Chuanji Zhao, Chaobo Tong, Yueying Liu, Yang Xiang, Zaiyun Li, Junyan Huang, Xiaohui Cheng, Shengyi Liu
• International Journal of Molecular Sciences 2022 Genome-Wide Characterization of Trehalose-6-Phosphate Synthase Gene Family of Brassica napus and Potential Links with Agronomic Traits, Ming Hu, Meili Xie, Xiaobo Cui, Junyan Huang, Xiaohui Cheng, Lijiang Liu, Shengyi Liu, Chaobo Tong
• Plant physiology 2019 Recursive paleohexaploidization shaped the durian genome, Jinpeng Wang, Jiaqing Yuan, Jigao Yu, Fanbo Meng, Pengchuan Sun, Yuxian Li, Nanshan Yang, Zhenyi Wang, Yuxin Pan, Weina Ge, Li Wang, Jing Li, Chao Liu, Yuhao Zhao, Sainan Luo, Dongcen Ge, Xiaobo Cui, Guangdong Feng, Ziwei Wang, Lei Ji, Jun Qin, Xiuqing Li, Xiyin Wang, Zhiyan Xi
• BMC genomics 2018 Genomic, expressional, protein-protein interactional analysis of Trihelix transcription factor genes in Setaria italia and inference of their evolutionary trajectory, Zhenyi Wang, Kanglu Zhao, Yuxin Pan, Jinpeng Wang, Xiaoming Song, Weina Ge, Min Yuan, Tianyu Lei, Li Wang, Lan Zhang, Yuxian Li, Tao Liu, Wei Chen, Wenjing Meng, Changkai Sun, Xiaobo Cui, Yun Bai, Xiyin Wang
• Molecular biology and evolution 2018 An overlooked paleotetraploidization in Cucurbitaceae, Jinpeng Wang, Pengchuan Sun, Yuxian Li, Yinzhe Liu, Nanshan Yang, Jigao Yu, Xuelian Ma, Sangrong Sun, Ruiyan Xia, Xiaojian Liu, Dongcen Ge, Sainan Luo, Yinmeng Liu, Youting Kong, Xiaobo Cui, Tianyu Lei, Li Wang, Zhenyi Wang, Weina Ge, Lan Zhang, Xiaoming Song, Min Yuan, Di Guo, Dianchuan Jin, Wei Chen, Yuxin Pan, Tao Liu, Guixian Yang, Yue Xiao, Jinshuai Sun, Cong Zhang, Zhibo Li, Haiqing Xu, Xueqian Duan, Shaoqi Shen, Zhonghua Zhang, Sanwen Huang, Xiyin Wang

Educations

• 2018.09 - now, Ph.D. candidate in Biochemistry and Molecular Biology, Oil Crops Research Institute of Chinese Academy of Agricultural Sciences, Wuhan.
• 2014.09 - 2018.06, B.Sc. in Bioinformatics, North China University of Science and Technology, Tangshan